om_code.corrections

Functions

applyautoflcorrection(self, ra, f0data, f1data)	Corrects for autofluorescence returning an array of replicates.
correctauto1(self, f, refstrain, figs, ...)	Corrects for autofluorescence for experiments with measured emissions at one wavelength using the fluorescence of the reference strain interpolated to the OD of the tagged strain.
correctauto2(self, f, refstrain, figs, ...)	Corrects for autofluorescence using spectral unmixing for experiments with measured emissions at two wavelengths.
findODcorrection(wdirpath, ODfname, exp, ...)	Uses a Gaussian process to fit serial dilution data to correct for non-linearities in the relationship between OD and cell density.
nanstdzeros2nan(a[, axis])	nanstd but setting zeros to nan
performmediacorrection(r_df, dtype, exp, ...)	Uses lowess to smooth the media data from Null wells over time and subtracts the smoothed values from the data.
processref1(self, f, refstrain, figs, ...)	Processes reference strain for data with one fluorescence measurement.
processref2(self, f, refstrain, figs, ...)	Processes reference strain data for spectral unmixing (for experiments with two fluorescence measurements).