PSB: Lectures

PSB: Lectures

There is a PDF file of notes for all the lectures.

Lectures on mathematical modelling

Introductory lecture (recording; slides, all slides)

Mesoscopic and macroscopic rate equations and dimerisation (recording; slides)

Diffusion-limited reactions and minimal concentrations (recording ; slides)

Equilibrium, thermodynamic cycles, and Hill functions (recording; slides)

Allostery and the MWC model (recording; slides)

Michaelis-Menten equation and enzymatic cascades (recording; slides)

Degradation and modelling constitutive gene expression (recording; slides)

Modelling regulated gene expression (recording; slides)

Non-linear dynamics (recording; slides)

Positive feedback and frog oocytes (recording; slides)

Modelling differentation in frog oocytes (recording; slides)

Positive feedback in genetic networks (recording; slides)

Negative feedback and oscillations (recording; slides)

Negative feedback and circadian rhythms (recording; slides)

Modelling circadian rhythms (recording; slides)

Simulating circadian rhythms (recording)

Positive and negative feedback and relaxation oscillations (recording; slides)

Stochasticity and biochemical reactions (recording; slides)

Running stochastic simulations (recording)